Here are the relevant entries in the log file:
"0","Cortex","Error","Cortex//RelinkOfflineClips(0): Unable to relink clip (X:\*redacted*\07_04_14\AXS\A01\A001C6HE\Clip\A001C001_1407059B\A001C001_1407059B.mxf) : Timecodes do not match. New timecode = 20:13:28:12 Old timecode = 20:12:15:18","","07-10-2014 05:28:27.717","17296","1","56713773377","CORTEX08"
"0","Cortex","Error","Cortex//RelinkOfflineClips(0): Unable to relink clip (X:\*redacted*\07_04_14\AXS\A02\A002CE38\Clip\A002C009_1407057M\A002C009_1407057M.mxf) : Timecodes do not match. New timecode = 01:07:09:20 Old timecode = 01:07:05:19","","07-10-2014 05:28:31.215","17296","1","56724218661","CORTEX08"
"0","Cortex","Error","Cortex//RelinkOfflineClips(0): Unable to relink clip (X:\*redacted*\07_04_14\AXS\A02\A002CE38\Clip\A002C004_140705G6\A002C004_140705G6.mxf) : Timecodes do not match. New timecode = 00:38:29:04 Old timecode = 00:38:26:20","","07-10-2014 05:28:32.392","17296","1","56727735531","CORTEX08"
"0","Cortex","Error","Cortex//RelinkOfflineClips(0): Unable to relink clip (X:\*redacted*\07_04_14\AXS\A01\A001C6HE\Clip\A001C012_140705YK\A001C012_140705YK.mxf) : Timecodes do not match. New timecode = 23:40:02:08 Old timecode = 23:38:37:05","","07-10-2014 05:28:38.276","17296","1","56745313298","CORTEX08"
"0","Cortex","Error","Cortex//RelinkOfflineClips(0): Unable to relink clip (X:\*redacted*\07_04_14\AXS\A02\A002CE38\Clip\A002C006_140705KE\A002C006_140705KE.mxf) : Timecodes do not match. New timecode = 00:54:38:20 Old timecode = 00:54:35:13","","07-10-2014 05:28:41.295","17296","1","56754332456","CORTEX08"
I think the reason why they relink OK when you mount the drive as R:\
is simply because if the file is found at the same location, we don’t check the timecodes… or maybe not as rigorously… is that right @peter?
Its not clear why the timecodes were not read properly to begin with.
One test you could do is to see what timecodes they come up with if you import them into a new job. Do they match what is shown as the ‘New Timecode’ or the ‘Old Timecode’ above? If you do it multiple times in different jobs, do you get the same results?